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Plot-scale (660 square centimeters (cm2) measurements of methane (CH4) were made using a portable chamber system at North Star Yedoma (NSY), a grassland field in interior Alaska characterized by thermokarst (thaw) mounds forming due to degradation of ice-rich Yedoma, polygonal-ground permafrost soil and at 25 other extensive thermokarst-mound study sites in Alaskan tundra, boreal forest and grassland ecosystems. Measurements were made during summer, winter, and thaw seasons from March 2020 through March 2023. Soil temperature and moisture were measured in-situ with handheld probes on unfrozen soils. Thermokarst mounds are regularly spaced conical hills (≤15 meters (m) diameter, ≤5 m height) separated by trenches (≤3 m width) that form in degrading ice-rich Yedoma permafrost environments. Their formation and morphology are based on the melting of large syngenetic ice wedges in polygonal patterned ground, where the polygon margins (trenches) underlain by ice wedges subside faster and deeper than the less ice-rich polygon centers (mound tops), leaving behind distinct conical-mound features in regularly-spaced patterns. Thermokarst mounds are known to emit nitrous oxide [Marushchak et al. 2021, doi.org/10.1038/s41467-021-27386-2], but their carbon fluxes have until now remained largely uncharacterized. This data set characterizes thermokarst-mound methane fluxes in Alaska. 

Permafrost thaw increases the bioavailability of ancient organic matter, facilitating microbial metabolism of volatile organic compounds (VOCs), carbon dioxide, and methane (CH₄). The formation of thermokarst (thaw) lakes in icy, organic-rich Yedoma permafrost leads to high CH₄emissions, and subsurface microbes that have the potential to be biogeochemical drivers of organic carbon turnover in these systems. However, to better characterize and quantify rates of permafrost changes, methods that further clarify the relationship between subsurface biogeochemical processes and microbial dynamics are needed. In this study, we investigated four sites (two well-drained thermokarst mounds, a drained thermokarst lake, and the terrestrial margin of a recently formed thermokarst lake) to determine whether biogenic VOCs (1) can be effectively collected during winter, and (2) whether winter sampling provides more biologically significant VOCs correlated with subsurface microbial metabolic potential. During the cold season (March 2023), we drilled boreholes at the four sites and collected cores to simultaneously characterize microbial populations and captured VOCs. VOC analysis of these sites revealed “fingerprints” that were distinct and unique to each site. Total VOCs from the boreholes included > 400 unique VOC features, including > 40 potentially biogenic VOCs related to microbial metabolism. Subsurface microbial community composition was distinct across sites; for example, methanogenic archaea were far more abundant at the thermokarst site characterized by high annual CH₄emissions. The results obtained from this method strongly suggest that ∼10% of VOCs are potentially biogenic, and that biogenic VOCs can be mapped to subsurface microbial metabolisms. By better revealing the relationship between subsurface biogeochemical processes and microbial dynamics, this work advances our ability to monitor and predict subsurface carbon turnover in Arctic soils. 

Abstract Methane (CH₄) release to the atmosphere from thawing permafrost contributes significantly to global CH₄emissions. However, constraining the effects of thaw that control the production and emission of CH₄is needed to anticipate future Arctic emissions. Here are presented robust rate measurements of CH₄production and cycling in a region of rapidly degrading permafrost. Big Trail Lake, located in central Alaska, is a young, actively expanding thermokarst lake. The lake was investigated by taking two 1 m cores of sediment from different regions. Two independent methods of measuring microbial CH₄ production, long term (CH₄accumulation) and short term (¹⁴C tracer), produced similar average rates of 11 ± 3.5 and 9 ± 3.6 nmol cm⁻³ d⁻¹, respectively. The rates had small variations between the different lithological units, indicating homogeneous CH₄production despite heterogeneous lithology in the surface ~1 m of sediment. To estimate the total CH₄production, the CH₄production rates were multiplied through the 10–15 m deep talik (thaw bulb). This estimate suggests that CH₄ production is higher than emission by a maximum factor of ~2, which is less than previous estimates. Stable and radioactive carbon isotope measurements showed that 50% of dissolved CH₄in the first meter was produced further below. Interestingly, labeled¹⁴C incubations with 2‐¹⁴C acetate and¹⁴C CO₂indicate that variations in the pathway used by microbes to produce CH₄depends on the age and type of organic matter in the sediment, but did not appear to influence the rates at which CH₄ was produced. This study demonstrates that at least half of the CH₄produced by microbial breakdown of organic matter in actively expanding thermokarst is emitted to the atmosphere, and that the majority of this CH₄is produced in the deep sediment.